RACS_id Recurrent.Gain.Loss X.log10.pValue. chr start stop KnownDrivers nGenes FragileSiteName FragileSiteCommon FragileSiteRare toplvl GenesInSegment Genetic_Coordinates KnownDrivers_Extended locus cnaLIHC1 gain 7.962925 5 914233 1294012 TERT 7 0 0 1 NKD2,RP11-661C8.3,SLC12A7,SLC6A18,SLC6A19,TERT,TRIP13 chr5:914233-1294012 TERT 5p15.33 cnaLIHC2 loss 3.936438 1 3218610 9177720 47 FRA1A 1 0 1 ACOT7,AJAP1,ARHGEF16,C1orf174,CA6,CAMTA1,CCDC27,CEP104,CHD5,DFFB,DNAJC11,ENO1,ERRFI1,ESPN,GPR153,GPR157,HES2,HES3,ICMT,KCNAB2,KLHL21,LRRC47,MEGF6,NOL9,NPHP4,PARK7,PER3,PHF13,PLEKHG5,PRDM16,RERE,RNF207,RPL22,SLC2A5,SLC2A7,SLC45A1,SMIM1,TAS1R1,THAP3,TNFRSF25,TNFRSF9,TP73,TPRG1L,UTS2,VAMP3,WRAP73,ZBTB48 chr1:3218610-9177720 RPL22 1p36.32 cnaLIHC3 loss 5.148751 1 47181123 47186173 1 0 0 1 EFCAB14 chr1:47181123-47186173 1p33 cnaLIHC4 gain 3.79814 2 20258963 20777712 4 0 0 1 HS1BP3,PUM2,RHOB,SDC1 chr2:20258963-20777712 2p24.1 cnaLIHC5 gain 1.723145 2 85897844 86006703 2 0 0 1 ATOH8,GNLY chr2:85897844-86006703 2p11.2 cnaLIHC6 loss 2.759111 2 148648812 149139962 3 0 0 1 ACVR2A,MBD5,ORC4 chr2:148648812-149139962 ACVR2A 2q22.3 cnaLIHC7 loss 1.526057 9 21622854 22979297 CDKN2A 6 FRA9A 0 1 1 C9orf53,CDKN2A,CDKN2B,DMRTA1,MTAP,RP11-145E5.5 chr9:21622854-22979297 CDKN2A 9p21.3 cnaLIHC8 loss 10.295884 9 37033260 37034643 PAX5 1 0 0 1 PAX5 chr9:37033260-37034643 PAX5 9p13.2 cnaLIHC9 gain 1.885434 20 22179160 26197899 31 0 0 1 ABHD12,ACSS1,APMAP,CD93,CST1,CST11,CST2,CST3,CST4,CST5,CST7,CST8,CST9,CST9L,CSTL1,ENTPD6,FAM182B,FOXA2,GGTLC1,GINS1,GZF1,NANP,NAPB,NINL,NXT1,PYGB,SSTR4,SYNDIG1,THBD,VSX1,ZNF337 chr20:22179160-26197899 FOXA2 20p11.22 cnaLIHC10 loss 2.813135 13 48704923 49219668 RB1 4 0 0 1 ITM2B,LPAR6,RB1,RCBTB2 chr13:48704923-49219668 RB1 13q14.2 cnaLIHC11 gain 2.157947 6 62234533 64684996 7 0 0 1 EYS,FKBP1C,KHDRBS2,LGSN,MTRNR2L9,PHF3,PTP4A1 chr6:62234533-64684996 6q11.1 cnaLIHC12 loss 2.763493 15 71167250 71174136 2 0 0 1 LRRC49,THAP10 chr15:71167250-71174136 15q23 cnaLIHC13 loss 1.816349 4 173872076 173876198 1 0 0 1 GALNTL6 chr4:173872076-173876198 4q34.1